MmuEX6101372 @ mm9
Exon Skipping
Gene
ENSMUSG00000061136 | Prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1860512]
Coordinates
chr2:52993738-53000714:-
Coord C1 exon
chr2:53000653-53000714
Coord A exon
chr2:52999495-52999626
Coord C2 exon
chr2:52993738-52998304
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTCGGTGTTTTGTACATAGGAC
3' ss Score
8.11
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAGAAGTTACAAGAAGTCAAAAAAGCATAAGAAGAAAAGCAAAAAGAGGAGGCATAAATCT
Seq A exon
GACTCTCCAGAATCAGATACTGAACGAGAAAAGGATAAAAAAGAAAAAGATCGGGACAGTGAAAAAGACAGAAGTAGACAGAGATCAGAATCAAAACACAAATCACCTAAGAAAAAGACTGGAAAGGATTCT
Seq C2 exon
GGTAACTGGGATACTTCTGGCAGTGAACTGAGTGAAGGGGAATTGGAAAAGCGCAGAAGAACCCTTTTGGAGCAACTGGATGATGATCAATAAATTATACCAAATATATGTTTATAGTATGATTTAAAGTCTAATTCAGACCAGGGATTATTTTAAGTCCAATTTACATAACACTGGGTTTTAATTGTGTCACAGGAAAAAGTGCATTTATGTATTGTTATTGTGGACTTTATAAAAGCAAAGGAATTGAAAATAACTTGATTCTGTATCAAGAATCATATTTTCCTATGGTAATAACTGTCTTTCTGTGACCCTTTCACAGGGCACTACAGGATGGATTAAAAGTGGCAATTTCATGATAGCTGCAGACGTCTCTACTTTGTTCTAAGTCATGAGGTGATTTGATTTCCTTTATAGAAGTTGGATTTTGAAGATACAATGAAAATTTTTGATAATGTAGTACAAAAAAAGCACCAGCAACCTATGAGAAGACTGCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061136-'39-35,'39-33,40-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAAAAGCAAAAAGAGGAGGC
R:
AAATGCACTTTTTCCTGTGACACA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: