RnoEX0070101 @ rn6
Exon Skipping
Gene
ENSRNOG00000004864 | Prpf40a
Description
pre-mRNA processing factor 40 homolog A [Source:RGD Symbol;Acc:1311401]
Coordinates
chr3:38682146-38685405:-
Coord C1 exon
chr3:38685344-38685405
Coord A exon
chr3:38684165-38684296
Coord C2 exon
chr3:38682146-38682940
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTAATTTTTATTTACATAGGAC
3' ss Score
6.3
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAGAAGTTACAAGAAATCAAAAAAGCATAAGAAGAAAAGCAAAAAGAGGAGACATAAATCT
Seq A exon
GACTCTCCAGAATCAGATACTGAACGAGAGAAGGATAAAAAAGAAAAAGATCGGGAAAGTGAAAAAGACAGAAGTAGGCAGAGATCAGAATCAAAACACAAATCACCTAAGAAAAAGACTGGAAAGGATTCT
Seq C2 exon
GGTAACTGGGATACTTCTGGCAGTGAACTGAGTGAAGGGGAATTAGAAAAGCGCAGAAGAACCCTTTTGGAGCAACTGGACGATGATCAATAAATTATACCAAATATATGTTTATAGTATGATTTAAAGTCTAATTCAGACCAGGGATTATTTTAAGTCCAATTTACATAACACTGGGTTTTAATTGTGTCACAGGAAAAAAGTGCATTTATGTATTGTTATTGTGGACTTTATAAAAGCAAAGGAAATTGAAAATAACTTGATTCTGTCTCAAGAATCATATTTTCCTATGGTGATAACTGTCTCTCTGTGACCCTTTCATAGGGCACTACAGGATGGATTAAAAGTGGCAATTGAATGATAGCTGCAGACGTCTCTGCTTTGTTTTAAGTCAGGAGGTGACCTGATTTCCTTTATACAAGTTGGATTTTGAAGATACAATGACAATTTTTTGATAATGTAGTACAAAAAAAGCACCAGCAACCTATGAGAAGACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004864-'36-41,'36-40,37-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAAGAAGAAAAGCAAAAAGAGGA
R:
TCCTGTGACACAATTAAAACCCAGT
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]