HsaEX6016068 @ hg38
Exon Skipping
Gene
ENSG00000196504 | PRPF40A
Description
pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr2:152651593-152659009:-
Coord C1 exon
chr2:152658948-152659009
Coord A exon
chr2:152657889-152658020
Coord C2 exon
chr2:152651593-152656398
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTATTTTCTATTCATACAGGAC
3' ss Score
7.71
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAGAAGTTATAAAAAGTCAAAAAAGCATAAGAAGAAAAGTAAGAAGAGGAGACATAAATCT
Seq A exon
GACTCTCCAGAATCCGATGCTGAGCGAGAGAAGGATAAAAAAGAAAAAGATCGGGAAAGTGAAAAAGACAGAACTAGACAAAGATCAGAATCAAAACACAAATCGCCTAAGAAAAAGACTGGAAAGGATTCT
Seq C2 exon
GGTAATTGGGATACTTCTGGCAGCGAACTGAGTGAAGGGGAATTGGAAAAGCGCAGAAGAACCCTTTTGGAGCAACTGGATGATGATCAATAAATTATACCAAATATATGTTTACAGTATGATTTAAAGTCTGATTCAGACCAGGGACTCTATTTTAAGTTCAACTGAAATAACACTGGGTTTTAATTATATCACAGGAAAAAAAAAGTGCATTTAAGTATTGTTATCGTGGACTTTATAAAAGCAAAGGAAATTGAAAGTAACTTTTGATTCTGTATCAAGAATCATATTTTCATACAGTCATAACTGTCTTTCTGTGACCCTTTCACAGGGCACTGTAGGATGGATTAAAGGTGGCAATTTACTGATAACTGCAGATGTCTCTACTTTGTTCTAAAATCTAAGTCATGAGGTGATTTGATTTACTTTATAGAAGCTGGATTTTGAAGATCTAATGAAAAATTTTTTGATAATATAGTAGTACAAAAAAAGCACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196504-'82-82,'82-77,85-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAAAGTAAGAAGAGGAGACA
R:
TCCACGATAACAATACTTAAATGCAC
Band lengths:
265-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains