BtaEX6009728 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048151 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr2:43640176-43642994:+
Coord C1 exon
chr2:43640176-43640237
Coord A exon
chr2:43641225-43641356
Coord C2 exon
chr2:43642902-43642994
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTTTTATTTGCAAAGGAC
3' ss Score
5.48
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAGAAGTTACAAGAAATCAAAAAAACATAAGAAGAAAAGCAAGAAGAGAAGACATAAATCA
Seq A exon
GACTCTCCAGAGTCAGATGCTGAAAGAGAAAAGGATAAAAAAGAAAAAGACCGGGAAGGCGAAAAAGACAGAACTAGACAAAGATCAGAATCAAAACACAAATCACCTAAGAAAAAGACTGGAAAGGATTCT
Seq C2 exon
GGTAATTGGGATACTTCTGGCAGTGAACTGAGTGAAGGAGAATTGGAAAAGCGCAGAAGGACCCTTTTGGAGCAACTGGATGATGATCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048151-'46-44,'46-43,47-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATAAGAAGAAAAGCAAGAAGAGA
R:
TATTGATCATCATCCAGTTGCTCCA
Band lengths:
130-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]