GgaEX0018933 @ galGal4
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35049313-35051914:-
Coord C1 exon
chr7:35051853-35051914
Coord A exon
chr7:35050583-35050717
Coord C2 exon
chr7:35049313-35049405
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCCTTTATTACAAAGGAT
3' ss Score
6.94
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
AGAGAAGTTACAAGAAGTCAAAAAAACACAAGAAAAAGAGCAAGAAAAGAAGACATAAGTCC
Seq A exon
GATTCACCAGAATCTGATATTGAACGAGAGAAAGACAAAAAAGAAAGAGAGAGAGAAAGTGAAAAGGATAGAGCTAGACAAAGATCTGAATCAAAACATAAATCTCCGACTAAAAAACGACCTGGAAAAGATTCT
Seq C2 exon
GGCAACTGGGACACCTCGGGCAGCGAGCTGAGCGAAGGGGAGCTGGAAAAGCAGAGGCGGACTCTTTTGGAACAACTGGATGAAGATCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020462fB2261
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGAAAAAGAGCAAGAAAAGA
R:
TCATTGATCTTCATCCAGTTGTTCCA
Band lengths:
130-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]