GgaEX0028897 @ galGal4
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35049313-35050717:-
Coord C1 exon
chr7:35050583-35050717
Coord A exon
chr7:35050162-35050206
Coord C2 exon
chr7:35049313-35049405
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATCCAATTTGCCAGATT
3' ss Score
5.87
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GATTCACCAGAATCTGATATTGAACGAGAGAAAGACAAAAAAGAAAGAGAGAGAGAAAGTGAAAAGGATAGAGCTAGACAAAGATCTGAATCAAAACATAAATCTCCGACTAAAAAACGACCTGGAAAAGATTCT
Seq A exon
ATTGATCTCAAAGGAGATGAGCAGGACAGCTGGTTGAACTCTGAG
Seq C2 exon
GGCAACTGGGACACCTCGGGCAGCGAGCTGAGCGAAGGGGAGCTGGAAAAGCAGAGGCGGACTCTTTTGGAACAACTGGATGAAGATCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020462fB3635
Main Skipping Isoform:
ENSGALT00000020462fB2261
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATAGAGCTAGACAAAGATCTGA
R:
TGTTCCAAAAGAGTCCGCCTC
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]