GgaEX0028947 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:3735176-3736314:+
Coord C1 exon
chr8:3735176-3735361
Coord A exon
chr8:3735490-3735675
Coord C2 exon
chr8:3736129-3736314
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTTTTCCTTTTCAGCCA
3' ss Score
10.49
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CCGTCACCTGCCCGGTGCTCAGCGCTCCAGAGCATGGAGAGCTGAACTGCTCCCACCTCCATGAGAACTTCACCTTCGGCTCCACGTGTGACTTCTCCTGCCAGCCAGGCTTTGAGCTCTTGGGGTCACAGAGTCGTGAATGCACGGCCACCAGGACTTGGACCAGGGAGAGCCCACAGTGCAAAG
Seq A exon
CCATCAGCTGCTCATTGCTCAGTGCTCCAGAGCACGGAGAGTTGAGCTGCTTCCACCTCTATGAGAACTTCACCTTTGGCTCCGTCTGTGACTTTTCCTGCCAGCCAGGGTTTGAGCTGATCGGGCCACAGAGCCGTGAGTGCACAGCCACTGGAACCTGGACTGGGAACACCTCGCAGTGCCAAG
Seq C2 exon
CCGTCAGCTGTCCAGTGCTGGATGTCCCCAGCCACAGCCACCTCAGCTGCTCTAATCTGCACGGGAACTTCACGTTCAACTCCACTTGCACCTTTTCCTGCAAGGAAGGATTTATCCGGGTGGGAGCGGAGATGCTCAGGTGTGCAGCCACGGGGAACTGGACCAGACATCCCCCAGTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=86.6)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGGAGAGCTGAACTGC
R:
AGGTGCAAGTGGAGTTGAACG
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]