GgaEX1000373 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4170938-4171702:-
Coord C1 exon
chr19:4171549-4171702
Coord A exon
chr19:4171228-4171292
Coord C2 exon
chr19:4170938-4171050
Length
65 bp
Sequences
Splice sites
3' ss Seq
GACTTGCTCCTGTTTCACAGGTG
3' ss Score
9.43
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GCCGGCGGGGTGCACCTGGTCACCCTCCTCGATGAAACCACCACGGCTGAGAGCCGGCAGGACGTCGCCGTCAACCTGGTGAAACTCTTCTTGGGCCAAGGGCTGGTGAAGGAGTTTCTGGACCTGCTCTTTGAACTGGAGCTGGCCAAGCCCT
Seq A exon
GTGAACCCAACACTTTGTTCCGGAGCAACTCCCTGGCCTCAAAGTCAATGGAGTCTTTCCTCAAG
Seq C2 exon
GTGACAGGGATGCAGTACCTGCATGCGGTGCTGGGGCCCACCATCTCCCGGGTGTTTGAGGAGAAGAAGTATGTGGAGCTGGACCCCAGCAAGGTGGAGATCAAGGACGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'14-14,'14-12,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.9=25.0)
A:
PF0061614=RasGAP=FE(11.2=100)
C2:
PF0061614=RasGAP=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGGTGAAGGAGTTTCT
R:
CCAACGTCCTTGATCTCCACC
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]