MmuEX6021648 @ mm9
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136577114-136577927:+
Coord C1 exon
chr5:136577114-136577264
Coord A exon
chr5:136577495-136577559
Coord C2 exon
chr5:136577815-136577927
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTAGAATTTCTGCTTGCAGGTG
3' ss Score
7.42
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCCCAGGACGGCTGATTCCTGTCATTGAGGAGACAACTAGTGCCGAGTGTCGCCAGGAAGTGGCCACCACCCTGCTCAAACTCTTCCTGGGGCAGGGGCTGGCCAAGGACTTTCTGGATCTGCTTTTTCAGCTGGAGCTGGGCCGCACCA
Seq A exon
GTGAAGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAGTCTTTCCTGAAG
Seq C2 exon
GTGGCAGGGATGCGCTATCTGCATGGCATCCTGGGCCCCATCATTGACAGAGTGTTCGAGGAGAAGAAGTACGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-'16-16,'16-15,18-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.5)
A:
PF0061614=RasGAP=FE(11.1=100)
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACTAGTGCCGAGTGTCG
R:
CACTCTGTCAATGATGGGGCC
Band lengths:
173-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: