MmuEX6021648 @ mm10
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136098688-136102427:+
Coord C1 exon
chr5:136098688-136098779
Coord A exon
chr5:136101625-136101689
Coord C2 exon
chr5:136102235-136102427
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTAGAATTTCTGCTTGCAGGTG
3' ss Score
7.42
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCGGTCAATGTCCAGAGACTTTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGCTGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCAA
Seq A exon
GTGAAGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAGTCTTTCCTGAAG
Seq C2 exon
GTGCTCTGGGCTGCACCGCCCACAGACCGAAGCTGAAGTGTTAGAGCAGAGTGCACAGACGCTGCGTGCCCACTTAGTGGCGCTGCTGAGCGCCATATGCCGCTCGGTTCGCACGTGCCCAGCCATCATCCGCGCCACATTCCGGCAGCTGTTCAGGCGCGTGCGCGAGCGCTTCCCGAACGCCCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952_MULTIEX2-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.2)
A:
PF0061614=RasGAP=FE(11.1=100)
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGTCCAAAAGCCGTCAA
R:
CTGAACAGCTGCCGGAATGT
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types