GgaEX1001178 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:270945-275968:+
Coord C1 exon
JH375182.1:270945-271104
Coord A exon
JH375182.1:271574-271739
Coord C2 exon
JH375182.1:275696-275968
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTCCATGTTGCAGTGA
3' ss Score
6.39
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AAAGGAGAAGTAATTTTTCCCAGCAATGAGAAATTTTCTGCAGGTTCTGATGGAAGTCTCTATGTAGTTTCGCCAGAGGGTGAAGAGACTGGGGAATATGTGTGTACTGCAACAAATGCTGCTGGCTACGCTACACGGAAAGTCCAGCTGACTGTATATG
Seq A exon
TGAAACCTAGAGTATCCAGGCCTGGAGACCAGCAAGGGCATGGACCTGTAGAGATCTCAGTAATTACAGGGGATGATGTCACACTTCCATGTGAAGTAAAGAGCTTGCCACCTCCAATAATTACCTGGGCTAAAGAGACACAGCTCATATCTCCATTCTCTCTAAG
Seq C2 exon
TTCCTCCTAAGATACAGCGTGGTCCTCAAATTATGAAAGTCCAGGCTGGCCACAGAGTTGACATACCTTGCAGTGCCCAAGGGAACCCTCCGCCAGCAATCACCTGGTTCAGGGGCAGCAGTGCTGTGCCAATAGGCAGCGGGCAGCCCACTCACAGCCTGGGTGGGGCTCTGAGCATCAGCAACGTCCAGCTTTCCAATGCTGGGATCTACAGGTGCATCGCCAGTAATGCAGCAGGCAGTGACACCTCCGAGATAACAATTCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX2-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.228
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(58.6=94.4)
A:
PF0767911=I-set=PU(50.6=76.8)
C2:
PF0767911=I-set=WD(100=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACGGAAAGTCCAGCTG
R:
CTGGCGATGCACCTGTAGATC
Band lengths:
257-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]