GgaEX1001179 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:271574-277120:+
Coord C1 exon
JH375182.1:271574-271739
Coord A exon
JH375182.1:273810-273937
Coord C2 exon
JH375182.1:277025-277120
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTGCTACTTAATTTTGCAGACA
3' ss Score
8.54
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TGAAACCTAGAGTATCCAGGCCTGGAGACCAGCAAGGGCATGGACCTGTAGAGATCTCAGTAATTACAGGGGATGATGTCACACTTCCATGTGAAGTAAAGAGCTTGCCACCTCCAATAATTACCTGGGCTAAAGAGACACAGCTCATATCTCCATTCTCTCTAAG
Seq A exon
ACACACTTTCCTACTCTCAGGGTCAATGAAGATCAGTGAGACACAAGTTTCAGACAGTGGAATGTATTTCTGTGTAGCCACCAATATTGCTGGGAATGTGACTCAGTCAGTGAAACTAAGTGTACATG
Seq C2 exon
AACCTCCTACTATGGATGATCTTGATCCTCAGTACAATAATCCCTTTCAAGAAAGAGTGGTAAATCAACGCATTGCATTCCCATGTCCAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.045 C2=0.485
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(50.6=76.8)
A:
PF0767911=I-set=PD(48.2=93.2)
C2:
PF0767911=I-set=PU(22.0=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTAGAGTATCCAGGCCTG
R:
ACATGGGAATGCAATGCGTTG
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]