GgaEX1001180 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:273810-277120:+
Coord C1 exon
JH375182.1:273810-273937
Coord A exon
JH375182.1:275696-275968
Coord C2 exon
JH375182.1:277025-277120
Length
273 bp
Sequences
Splice sites
3' ss Seq
TAACTTATCTTCTTGCTTAGTTC
3' ss Score
6.33
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACACACTTTCCTACTCTCAGGGTCAATGAAGATCAGTGAGACACAAGTTTCAGACAGTGGAATGTATTTCTGTGTAGCCACCAATATTGCTGGGAATGTGACTCAGTCAGTGAAACTAAGTGTACATG
Seq A exon
TTCCTCCTAAGATACAGCGTGGTCCTCAAATTATGAAAGTCCAGGCTGGCCACAGAGTTGACATACCTTGCAGTGCCCAAGGGAACCCTCCGCCAGCAATCACCTGGTTCAGGGGCAGCAGTGCTGTGCCAATAGGCAGCGGGCAGCCCACTCACAGCCTGGGTGGGGCTCTGAGCATCAGCAACGTCCAGCTTTCCAATGCTGGGATCTACAGGTGCATCGCCAGTAATGCAGCAGGCAGTGACACCTCCGAGATAACAATTCAAGTTCAAG
Seq C2 exon
AACCTCCTACTATGGATGATCTTGATCCTCAGTACAATAATCCCTTTCAAGAAAGAGTGGTAAATCAACGCATTGCATTCCCATGTCCAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.228 C2=0.485
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(48.2=93.2)
A:
PF0767911=I-set=WD(100=95.7)
C2:
PF0767911=I-set=PU(22.0=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTTTCCTACTCTCAGGGT
R:
TACTGGACATGGGAATGCAATGC
Band lengths:
220-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]