GgaEX1001187 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:363034-367311:+
Coord C1 exon
JH375182.1:363034-363155
Coord A exon
JH375182.1:364733-364970
Coord C2 exon
JH375182.1:367249-367311
Length
238 bp
Sequences
Splice sites
3' ss Seq
GCTGATGTTGGCTGTTTCAGGAT
3' ss Score
7.52
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAGAGGTTCTGCGAATGACTCACATTGCCCGGGGGTTGGATTCTGATGGAGCCTTACTGCTGGATGTTGTTGTGAATGGCCATGTTCTTCAGCTGCAGCCACTAGCTAATGTTAACATGAAG
Seq A exon
GATTACACAGAAGACTACATTCAGACCGGCCCCGGGCAGCTGTATGCCTATTCCACTCGCCTCTTTGCTGTGGATGGAGTTAGTGTTCCCTACATGTGGAACCACACTATTACCTATGATCACACTAAAGGAAAAATGCCTTTTTTGGTGGAAACACTCCATGCTTCCTCTATCACAACAGAGTACAACCCCCTGGAAGAAACTTTGGCTTTTAAAATCCACGCTTCCATTTCAAAAG
Seq C2 exon
GAGATCGTAACAACCAGTGTCCTGCTGGGTTTGAGTTGAACTCATCTGGGCCTTACTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX4-10/10=9-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(21.3=100)
A:
PF074747=G2F=PD(26.1=61.2)
C2:
PF146701=FXa_inhibition=PU(4.9=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTGCGAATGACTCACA
R:
TGTACAGTAAGGCCCAGATGAGT
Band lengths:
181-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]