GgaEX1002457 @ galGal3
Exon Skipping
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22606645-22608904:+
Coord C1 exon
chr8:22606645-22606786
Coord A exon
chr8:22608461-22608505
Coord C2 exon
chr8:22608777-22608904
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCCTTTATTTTGTTTTACAGATC
3' ss Score
12.12
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATAACTGGTGACAAAGTATTGAATCTATTAGTGTCACTGGGAGAAGAATACCCATATGCCTTTCCCAGATGGTTTGGACCAGTGCTGCCATCTCTAGTAGTCCACCATCCTGAATATGCCAAGACTATACTTGGACGAGGAG
Seq A exon
ATCCCAAGCCTCCTGTACCTTATCAGTTCTTAGTTCCATGGATTG
Seq C2 exon
GCAAAGGGTTGCTGGTCTTGAGTGGAACCAAATGGTTTCAGCATCGGAAGTTGCTCACTCCAGCGTTTCACTATGATGTGCTGAAATCTTACGTGTCCCTGATGTCAGACTCAGTCAAAGTGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(3.3=100)
C2:
PF0006717=p450=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGCTGCCATCTCTAGT
R:
AACGCTGGAGTGAGCAACTTC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]