HsaEX0018323 @ hg38
Exon Skipping
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46810808-46812623:+
Coord C1 exon
chr1:46810808-46810949
Coord A exon
chr1:46811140-46811184
Coord C2 exon
chr1:46812496-46812623
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGATTGTCTCCTCCTGCAGACC
3' ss Score
10.96
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCCAGGAGACGGGGAGCCTGGACAAAGTGGTGTCCTGGGCCCACCAGTTCCCGTATGCCCACCCACTCTGGTTCGGACAGTTCATTGGCTTCCTGAACATCTATGAGCCTGACTATGCCAAAGCTGTGTACAGCCGTGGGG
Seq A exon
ACCCTAAGGCCCCTGATGTGTATGACTTCTTCCTCCAGTGGATTG
Seq C2 exon
GGAGAGGCCTGCTGGTTCTTGAGGGGCCCAAGTGGTTGCAGCACCGCAAGCTGCTCACACCTGGCTTTCATTATGATGTGCTGAAGCCCTATGTGGCCGTGTTCACTGAGTCTACACGTATCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973_MULTIEX1-1/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.3=100)
C2:
PF0006717=p450=FE(25.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCGGACAGTTCATTGGCT
R:
ATGAAAGCCAGGTGTGAGCAG
Band lengths:
143-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development