GgaEX1002457 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20784634-20786893:+
Coord C1 exon
chr8:20784634-20784775
Coord A exon
chr8:20786450-20786494
Coord C2 exon
chr8:20786766-20786893
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCCTTTATTTTGTTTTACAGATC
3' ss Score
12.12
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATAACTGGTGACAAAGTATTGAATCTATTAGTGTCACTGGGAGAAGAATACCCATATGCCTTTCCCAGATGGTTTGGACCAGTGCTGCCATCTCTAGTAGTCCACCATCCTGAATATGCCAAGACTATACTTGGACGAGGAG
Seq A exon
ATCCCAAGCCTCCTGTACCTTATCAGTTCTTAGTTCCATGGATTG
Seq C2 exon
GCAAAGGGTTGCTGGTCTTGAGTGGAACCAAATGGTTTCAGCATCGGAAGTTGCTCACTCCAGCGTTTCACTATGATGTGCTGAAATCTTACGTGTCCCTGATGTCAGACTCAGTCAAAGTGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(3.3=100)
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGCTGCCATCTCTAGT
R:
AACGCTGGAGTGAGCAACTTC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]