MmuEX6095200 @ mm9
Exon Skipping
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115312910-115314592:-
Coord C1 exon
chr4:115314451-115314592
Coord A exon
chr4:115314222-115314266
Coord C2 exon
chr4:115312910-115313037
Length
45 bp
Sequences
Splice sites
3' ss Seq
GATGTCCCCTTGTCCTGCAGACC
3' ss Score
10.65
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATCCAGAAGACAGGAGGCCTGGACAAGGTGGTAACTTGGACCGAACAGTTCCCCTATGCCCACCCACTCTGGCTTGGACAATTTATTGTTTTCCTGAACATCTATGAGCCTGACTATGCTAAAGCTGTATACAGCCGAGGGG
Seq A exon
ACCCGAAGGCTGCATATGTGTATGACTTCTTCCTCCAGTGGATCG
Seq C2 exon
GAAAAGGCCTACTGGTTCTGGAAGGGCCAAAATGGTTCCAGCACCGCAAGCTGCTCACACCTGGCTTCCATTATGATGTGCTGAAGCCCTATGTGGCCATATTTGCTGAGTCCACACGGGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.3=100)
C2:
PF0006717=p450=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACCGAACAGTTCCCCTA
R:
GGAACCATTTTGGCCCTTCCA
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: