GgaEX1002791 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36847780-36849248:-
Coord C1 exon
chr7:36849051-36849248
Coord A exon
chr7:36848512-36848616
Coord C2 exon
chr7:36847780-36847884
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTGGATATCTTAGGTG
3' ss Score
6.84
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGCCTGTACAAGGAAACCTATGAAAAGAATAAAGCCAAAGTCCACATTATTCCAGACATGGTAGACATAATTGCTGCTAAAGATGCACAGAAGAAGATCAGTGAAATTGATTACCGCACACATCTCCATGACTGGATCTGCCTACCAGATCTTCAGATCAATGCACATGTTCGAAAAGTAGCTGATCAGATCAGTGAT
Seq A exon
GTGGTGTACAAGGATGATCTTAACTGGCTGAAAGGCATTGGCTGCTTTGTTTGGGACACTCCTGAGATTCTCCATGCTAAACATGCCTACGACCTTCGCAGTGAT
Seq C2 exon
ATCAAGTACAAATCTGATGCAGACAAGATGAAGAGCAAATACACTGTGGTCATGGACACTCCCGTCTATGTCCAGAATATCCTCAGTGGCTTGAATGCCAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'96-99,'96-98,97-99=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=16.7),PF0088013=Nebulin=PU(50.0=19.7)
A:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAAAGTCCACATTATTCCA
R:
TGGACATAGACGGGAGTGTCC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]