MmuEX6101282 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52200626-52202011:-
Coord C1 exon
chr2:52201814-52202011
Coord A exon
chr2:52201398-52201502
Coord C2 exon
chr2:52200626-52200730
Length
105 bp
Sequences
Splice sites
3' ss Seq
TATCTGCTGAAACCCCCTAGATT
3' ss Score
5.03
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGCCTGTACAGATCAGTGTACGAGAAGAACAAGATGAAAATCAACATCGTGCCCGACATGGTGGAGATGGTGACTGCCAAGGACTCTCAGAAGAAAGTCAGCGAGATCGACTACCGCCTGCACCTCCATGAGTGGATTTGCCACCCTGACTTACAAGTCAACAGTCACGTCAGAAAAGTGACAGACCAGATCAGCGAC
Seq A exon
ATTGTATACAAGGATGACCTCACCTGGCTGAAAGGCATTGGTTGCTACGTCTGGGACACTCCTGAAATTCTCCATGCAAAGCATGCTTATGACCTACGCAATGAT
Seq C2 exon
ATCAAGTATAAAGCTCACGTGCAGAAGACAAGGAATGACTACAAGCTGGTGACTGACACACCGGTTTACGTTCAGGCAGTCAAGAGTGGGAAGCAGCTGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'120-128,'120-127,121-128=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(50.0=19.7)
A:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGGAGATGGTGACTGC
R:
CTCAGCTGCTTCCCACTCTTG
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types