BtaEX0024174 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44692340-44712400:+
Coord C1 exon
chr2:44692340-44692537
Coord A exon
chr2:44692861-44692965
Coord C2 exon
chr2:44712296-44712400
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCATCTGTTGCAACCCCCAGATT
3' ss Score
7.1
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGCCTGTACAGATCTGTTTATGAGAAGAACAAGATGAAAATCCACATAGTGCCTGACATGGTAGAGATGGTTACCGCTAAGGATTCTCAGAAGAAAGTCAGTGAGATCGACTACCGCCTTCACCTCCACGAGTGGATTTGCCACCCCGACTTGCAAGTCAACAGTCACGTCAGGAAGGTCACAGACCAGATCAGTGAC
Seq A exon
ATTGTGTACAAGGATGACCTCACCTGGCTGAAAGGCATTGGTTGCTACGTCTGGGACACTCCTGAGATTCTCCACGCCAAGCATGCTTACGATCTACGCAACGAT
Seq C2 exon
ATCAAGTACAGAAAGAATTATGAAGAAACAAAGGACAAGTTTACCTCAATCGTGGATACTCCAGAACACCTACGTACTACAAAAGTCAACAAACAAATCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX4-9/31=8-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(50.0=19.7)
A:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATAGTGCCTGACATGGT
R:
ACTTTTGTAGTACGTAGGTGTTCTGG
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development