BtaEX0024163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44694626-44712400:+
Coord C1 exon
chr2:44694626-44694733
Coord A exon
chr2:44696305-44696412
Coord C2 exon
chr2:44712296-44712400
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTTCATCCTGGCAGAAT
3' ss Score
7.95
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCTGTCTACCACTATGACTACGTGCACAGCATCAGAGGCAGAGTGGCTCCGACCACAAAAACCGTGGATCTGGATCGGGCCCTTCATGCATACAAGCTCCAGAGTGAG
Seq A exon
AATCTGTACCGAAAAGCTGGCCTGCATGCCCTGCCCACTGGATACAGGCTTCCGGTCGACACCCCTCACTTCAAACACACCAAGGACACCCGATACATGAGCAGCTAT
Seq C2 exon
ATCAAGTACAGAAAGAATTATGAAGAAACAAAGGACAAGTTTACCTCAATCGTGGATACTCCAGAACACCTACGTACTACAAAAGTCAACAAACAAATCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX4-12/31=11-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(57.1=44.4)
A:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACCACTATGACTACGTGCA
R:
TCACTGATTTGTTTGTTGACTTTTGT
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development