MmuEX6101285 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52196292-52199511:-
Coord C1 exon
chr2:52199404-52199511
Coord A exon
chr2:52197797-52197901
Coord C2 exon
chr2:52196292-52196399
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTTCATCCTGGCAGAAT
3' ss Score
8.76
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCTGTCTACCACTATGACTACGTGCACAGTGTCAGAGGCAAAGTGGCCCCAACTACAAAAACGGTGGATCTGGACCGGGCCCTCCATGCATACAAGCTTCAGAGTGAG
Seq A exon
AATTTGTACAAGAAAGGCCTGCGCTTCCTGCCCACTGGGTACAGGCTCCCTGTTGATACCCCTCATTTCAATCACACCAAGGATACCCGCTACATGAGCAGCTAT
Seq C2 exon
TTCAAATACAAAGAAGCCTATGAACACATCAAGGCAAATGGGTACACACTTGGACCCAAGGATGTCCCGTTTGTCCATGTCCGGAGAGTCAACAACGTTACTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'123-131,'123-130,124-131
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(64.0=44.4)
A:
PF0088013=Nebulin=PD(28.0=20.0),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTACCACTATGACTACGTG
R:
AGTAACGTTGTTGACTCTCCGG
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types