BtaEX0024168 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44699332-44712400:+
Coord C1 exon
chr2:44699332-44699430
Coord A exon
chr2:44699757-44699867
Coord C2 exon
chr2:44712296-44712400
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCGCATTCCCCTTCTTAAGTCT
3' ss Score
3.77
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTAAATACAAAGAGGACTTGCAGGTCCTGAGGGGGATGGGCTGCTTCCTGTACGACACTCCAGACATGGTCCGCTCCCGGCACCTGCGGAAGCTCTGG
Seq A exon
TCTCACTACCTGTACACCGATAAGGCAAGGAAGATGCGAGACAAGTACAAGGTGGTGCTCGACACTCCGGAATACAGGAAAGTGCAGGAGCTGAAGACACATCTGAGCGAG
Seq C2 exon
ATCAAGTACAGAAAGAATTATGAAGAAACAAAGGACAAGTTTACCTCAATCGTGGATACTCCAGAACACCTACGTACTACAAAAGTCAACAAACAAATCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX4-17/31=16-23
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=33.3),PF0088013=Nebulin=PU(48.3=42.4)
A:
PF0088013=Nebulin=PD(44.8=35.1),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAATACAAAGAGGACTTGCAGGT
R:
TCACTGATTTGTTTGTTGACTTTTGT
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development