MmuEX6101290 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52193170-52194478:-
Coord C1 exon
chr2:52194380-52194478
Coord A exon
chr2:52193876-52193986
Coord C2 exon
chr2:52193170-52193274
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCTGGCTTTCTTCTTCTAAGTCG
3' ss Score
5.09
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTAAATACAAAGAGGATCTGCAGATCTTGAAGGGGCTTGGCTGCTTCCTGTATGACACTCCTGACATGGTCCGCTCCCGGCACCTAAGGAAACTCTGG
Seq A exon
TCGAACTACCTGTACACGGATAATGCCAGGAAGATGAGAGACAAATACAAAGTGGTGCTTGACACCCCAGAATACAGAAAAGTGCAGGAACTGAAGACGCATCTGAGTGAG
Seq C2 exon
CTGGTGTACAGAGCCTCAGGCAAGAAGCAGAAGTCCATCTTCACTTCAGTTCCTGATACCCCTGACCTTCTAAGAGCCAAGCGAGGACAGAAGCTTCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'128-136,'128-135,129-136=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=33.3),PF0088013=Nebulin=PU(48.3=42.4)
A:
PF0088013=Nebulin=PD(44.8=35.1),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(72.7=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCAGATCTTGAAGGGGC
R:
GACTCTGAAGCTTCTGTCCTCG
Band lengths:
186-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types