RnoEX0058988 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37705940-37707214:-
Coord C1 exon
chr3:37707116-37707214
Coord A exon
chr3:37706631-37706741
Coord C2 exon
chr3:37705940-37706044
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTTCTTCTTCTAAGTCG
3' ss Score
5.03
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTAAATACAAAGAGGACCTGCAGATCTTGAAGGGACTTGGCTGCTTCCTGTATGACACCCCTGACATGGTCCGCTCCCGGCACCTAAGGAAACTCTGG
Seq A exon
TCGAATTACCTGTACACGGATAAAGCCAGGAAGATGCGAGACAAATACAAAGTGGTGCTTGATACCCCAGAGTACAGAAAAGTGCAGGAACTGAAGACACATCTGAGTGAG
Seq C2 exon
CTGGTTTACAGAGCCTCAGGCAAGAAGCAGAAGTCCATCTTCACTTCAGTTCCCGATACCCCTGACCTTCTAAGAGCCAAGCGAGGACAGAAGCTTCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'117-125,'117-124,118-125
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=33.3),PF0088013=Nebulin=PU(48.3=42.4)
A:
PF0088013=Nebulin=PD(44.8=35.1),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(72.7=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAAATACAAAGAGGACCTGCAGA
R:
GACTCTGAAGCTTCTGTCCTCG
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]