GgaEX1002793 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36844058-36844779:-
Coord C1 exon
chr7:36844681-36844779
Coord A exon
chr7:36844341-36844451
Coord C2 exon
chr7:36844058-36844162
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATACTGCCTTTATCTTTCAGTCT
3' ss Score
9.09
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AATAAATACAAAGAGGATCTGAAGTGGTTGCAAGGCTTGGGCTGCTTCCTTTATGATACTCCTGATATGGTCCGTGCTCGTCAGCTGCGTAAGCTTTGG
Seq A exon
TCTAATTATGTATATACTGATAGCGCAAAGAAGATGCGGGATAAATACAGTGTGGTATTGGATACTCCTGGATACAGGACTGTTCAGGAACTAAAAACCCATTTGAGTGAT
Seq C2 exon
CTGGTTTACAGAGCTGCAGGCAAGGAGCTGAAGACAAAATACACTTCCGTCCTTAACACACCTGACTTCTTAAGAGCCAAGGAAGGACAAAGAATACAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'107-107,'107-106,108-107=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(48.3=42.4)
A:
PF0088013=Nebulin=PD(44.8=35.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATACAAAGAGGATCTGAAGTGGT
R:
CTGGCTCTGTATTCTTTGTCCT
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]