GgaEX1002793 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34717082-34717803:-
Coord C1 exon
chr7:34717705-34717803
Coord A exon
chr7:34717365-34717475
Coord C2 exon
chr7:34717082-34717186
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATACTGCCTTTATCTTTCAGTCT
3' ss Score
9.09
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AATAAATACAAAGAGGATCTGAAGTGGTTGCAAGGCTTGGGCTGCTTCCTTTATGATACTCCTGATATGGTCCGTGCTCGTCAGCTGCGTAAGCTTTGG
Seq A exon
TCTAATTATGTATATACTGATAGCGCAAAGAAGATGCGGGATAAATACAGTGTGGTATTGGATACTCCTGGATACAGGACTGTTCAGGAACTAAAAACCCATTTGAGTGAT
Seq C2 exon
CTGGTTTACAGAGCTGCAGGCAAGGAGCTGAAGACAAAATACACTTCCGTCCTTAACACACCTGACTTCTTAAGAGCCAAGGAAGGACAAAGAATACAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'35-33,'35-32,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(48.3=42.4)
A:
PF0088013=Nebulin=PD(44.8=35.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATACAAAGAGGATCTGAAGTGGT
R:
CTGGCTCTGTATTCTTTGTCCT
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]