BtaEX0024164 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44696305-44712400:+
Coord C1 exon
chr2:44696305-44696412
Coord A exon
chr2:44697733-44697840
Coord C2 exon
chr2:44712296-44712400
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTCACTTTGCTTTTGCAGTTT
3' ss Score
9.44
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AATCTGTACCGAAAAGCTGGCCTGCATGCCCTGCCCACTGGATACAGGCTTCCGGTCGACACCCCTCACTTCAAACACACCAAGGACACCCGATACATGAGCAGCTAT
Seq A exon
TTTAAGTACAAAGAAGTTTATGAACACATGAAGGCATATGGGTACACACTTGGACCCAATGATGTCCCATTTGTCAACGTCCGGAGGGTCAACAACATTACCAGCGAG
Seq C2 exon
ATCAAGTACAGAAAGAATTATGAAGAAACAAAGGACAAGTTTACCTCAATCGTGGATACTCCAGAACACCTACGTACTACAAAAGTCAACAAACAAATCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX4-13/31=12-23
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=30.6)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTACCGAAAAGCTGGCC
R:
TCACTGATTTGTTTGTTGACTTTTGT
Band lengths:
211-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development