GgaEX6043294 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34718179-34720003:-
Coord C1 exon
chr7:34719896-34720003
Coord A exon
chr7:34718901-34719008
Coord C2 exon
chr7:34718179-34718283
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCCCACTTTATAGCTG
3' ss Score
10.09
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AATTTGTATCGCTGGGCTGGTTTGAAAGCTCTTCCAACGGGATACAGTCTTCCCAAAGATACTCCTGGCTTCCAGCATGCTAAACATGTCCAGCACATTGGCAGTGAT
Seq A exon
CTGAAATATAAAGAAGCTTATGAACATATGAAAGCTAAAGGCTACACCCTGGGACCTAACGATGTTGGGTTTGAAAATGTGAAGAAAGTGAATCAAGTCATTAATGAG
Seq C2 exon
AGGTTGTATCGGGCAACGTACCACAAGAACAAGGATAAGATTCATACTACTCCAGACACACCAGAAATCCGTCAAGTCAGAGCAACGCAGGAAGCTGTCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'29-29,'29-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.486
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(30.8=22.2),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(53.6=41.7)
C2:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATCGCTGGGCTGGTTTG
R:
ATCACTGACAGCTTCCTGC
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]