DreEX0050025 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23024667-23031779:-
Coord C1 exon
chr9:23031672-23031779
Coord A exon
chr9:23031480-23031587
Coord C2 exon
chr9:23024667-23024771
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAATGTTACAATCTCTGCAGATG
3' ss Score
7.83
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AACTTCTACAAAGAGGCCAATAAGTCATTTATGCCCACTGGATACTCTCTGCCTTACGACACTCCACTCAACAAACAAGCCAAGGCCAACAGCATCGTCACCAGCAAT
Seq A exon
ATGAAGTACAGAGAAGCCTATGATCTGATGAAAGCGAGAAGCTACAAACTTGATCCAGAAGGTGTTAACTTTGTCACCATCAGGAAGGCAAATAAGGTCACCAATGAA
Seq C2 exon
CTGAAATACAAGGAAGTGTATGAAAGAAACAAAGCTCAGATCAACATGGCACCTGATGCTCATGAAATCCGTGCCGCTAAAGAGGCCTACAAGAACATTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630_MULTIEX3-10/26=9-26
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=25.0),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(53.6=41.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTACAAAGAGGCCAATAAGTCA
R:
TGCTAATGTTCTTGTAGGCCTCT
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]