RnoEX6016842 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37708342-37710604:-
Coord C1 exon
chr3:37710500-37710604
Coord A exon
chr3:37708957-37709064
Coord C2 exon
chr3:37708342-37708446
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCTGGCTTTGTTTTCTCAGTTT
3' ss Score
7.43
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
AATCTGTACAAGAAAGGCCTGCGTTTCCTGCCTACTGGGTACAGGCTCCCCGTTGATACCCCTCATTTCAACCACACCAAGGACACCCGCTACATGAGCAGCTAT
Seq A exon
TTTAAGTACAAAGAAGCCTATGAACACATCAAGGCAAATGGCTACACGCTTGGACCCAAGGACGTCCCATTTGTCCATGTCCGGAGAGTCAACAACGTTACTAGTGAG
Seq C2 exon
AGACTATATCGAGAACTGTATCATAAACTGAAAGACAAGATACATACAACTCCAGACACACCTGAAATCCGCCAAGTCAAGAAGACACAAGAGGCTGTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'112-120,'112-119,113-120=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=20.0),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6)
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGTACAAGAAAGGCCTGCG
R:
CTCACTGACAGCCTCTTGTGT
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]