GgaEX6043294 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36845155-36846979:-
Coord C1 exon
chr7:36846872-36846979
Coord A exon
chr7:36845877-36845984
Coord C2 exon
chr7:36845155-36845259
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCCCACTTTATAGCTG
3' ss Score
10.09
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AATTTGTATCGCTGGGCTGGTTTGAAAGCTCTTCCAACGGGATACAGTCTTCCCAAAGATACTCCTGGCTTCCAGCATGCTAAACATGTCCAGCACATTGGCAGTGAT
Seq A exon
CTGAAATATAAAGAAGCTTATGAACATATGAAAGCTAAAGGCTACACCCTGGGACCTAACGATGTTGGGTTTGAAAATGTGAAGAAAGTGAATCAAGTCATTAATGAG
Seq C2 exon
AGGTTGTATCGGGCAACGTACCACAAGAACAAGGATAAGATTCATACTACTCCAGACACACCAGAAATCCGTCAAGTCAGAGCAACGCAGGAAGCTGTCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'102-103,'102-102,104-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.486
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(30.8=22.2),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(53.6=41.7)
C2:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATCGCTGGGCTGGTTTG
R:
ATCACTGACAGCTTCCTGC
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]