GgaEX1003825 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15221949-15223302:-
Coord C1 exon
chr14:15223222-15223302
Coord A exon
chr14:15223024-15223125
Coord C2 exon
chr14:15221949-15222076
Length
102 bp
Sequences
Splice sites
3' ss Seq
CATGTTGTTTTTCATTCTAGGTT
3' ss Score
11.55
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
Seq A exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
Seq C2 exon
GATAACCCTAAGAAAACTACAGAAAGCGAGCGTGGGGATTTTTACATCACAGGGGACAGAGCGACTATGGATGAAGATGGATATTTTTGGTTTATTGGAAGAGACGACGATATCATCATTTCTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.186
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.2=100)
A:
PF0050123=AMP-binding=FE(7.9=100)
C2:
PF0050123=AMP-binding=PD(9.8=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTAGAGGAATGAAGATCAAGCC
R:
CCCGAAGAAATGATGATATCGTCGT
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]