GgaEX1003825 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14466538-14468373:-
Coord C1 exon
chr14:14468293-14468373
Coord A exon
chr14:14468095-14468196
Coord C2 exon
chr14:14466538-14466637
Length
102 bp
Sequences
Splice sites
3' ss Seq
CATGTTGTTTTTCATTCTAGGTT
3' ss Score
11.55
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
Seq A exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
Seq C2 exon
GTATCGCATTGGGCCATTTGAGGTAGAGAGTGCCCTGATAGAACACCCAGCAGTAGCAGAAACAGCTGTTGTCAGCAGTCCAGATCCCCTCAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-21/24=20-23
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.059
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTATTTCTAGAGGAATGAAGA
R:
TCTCCTCTGAGGGGATCTGGA
Band lengths:
171-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]