GgaEX1003829 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15238871-15241204:-
Coord C1 exon
chr14:15241048-15241204
Coord A exon
chr14:15239925-15240004
Coord C2 exon
chr14:15238871-15238994
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTATTTTCCTAGACT
3' ss Score
8.97
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCACTGGATGAACTTGACTCCCTCAGATATAATGTGGAATACCTCTGATACTGGCTGGGTAAAGGCAGCTTGGAGCAGCGTATTTGCACCATGGATCAGTGGATCTTGTGTTTTTGTTCACAACATGCCACAGTTTAAACCAACAGTCATTGCAGAA
Seq A exon
ACTCTCTCAAGATACCCTATCACCGTCTTCTGCACTGCTCCCACTGCCTACCGCATGCTTGTCCAACATGATGTGAGCAG
Seq C2 exon
CTACAAATTCATGACTGTGAAACACTGTCTATCTGGAGGAGAACCACTCAATCCTGAGGTGATGGAGAAGTGGAAAATCCAAACAGGGCTGGATATCTATGAAGGCTATGGCCAGACCGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.5=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTAAAGGCAGCTTGGAG
R:
CCACTTCTCCATCACCTCAGGA
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]