GgaEX1003833 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15236711-15237822:-
Coord C1 exon
chr14:15237721-15237822
Coord A exon
chr14:15236940-15237067
Coord C2 exon
chr14:15236711-15236810
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTACTATTGATTGTTATAAGGAT
3' ss Score
5.56
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATCATAGATGACCATGGGGCTGTTCTGCCTGAAGGAGAAGAAGGCAACATTGCTATCCAAGTTAAACCTTCACGACCCTTCTGCATGTTCTCTGAGTACTTG
Seq A exon
GATAACCCAGAGAAAACTGCTGCCTGCATGACTGGAAACTTTTACGTCACTGGAGACAGAGGGATTATGGATGAAGAAGGATATGTCTGGTTTGTTGGAAGAGCTGATGATATAATTAATTCTGCTGG
Seq C2 exon
GTATCGTATTGGTCCATTTGAAGTTGAAAGTGCATTAATACAACACCCGGCAGTCTCAGAGTCAGCTGTTGTCAGCAGTCCTGATCCAATTCGAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATAGATGACCATGGGGCTGT
R:
CTCCCCTCGAATTGGATCAGG
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]