DreEX0010858 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44876373-44880031:-
Coord C1 exon
chr2:44879930-44880031
Coord A exon
chr2:44877892-44878019
Coord C2 exon
chr2:44876373-44876472
Length
128 bp
Sequences
Splice sites
3' ss Seq
AATCTAAATTCATCCTAAAGGGG
3' ss Score
3.06
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
GTGGTGGATGAAAATGGCTCTGTTGTGCCAAAAGGACAAGAGGGAGACCTCGGCATCCGAGTGAAACCAGAGAGACCCTTCTCTCTTTTTACAGAGTATACG
Seq A exon
GGGGAGCCAGTGCGCACAGCAGAATGTTTCCGTGGCGATTTCTACCTGACAGGTGACCGGGGAATGATGGACGATGAAGGATATTTGTGGTTCATCGGCAGATCTGATGACGTCATCTTGTCTGCAGG
Seq C2 exon
GTACCGTATTGGTCCATTTGAGGTGGAAAATGCCCTGATAGAGCATCCAGCTGTAGCTGAATCAGCCGTAGTCAGCAGCCCTGATCCTGTTCGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGATGAAAATGGCTCTG
R:
GAACAGGATCAGGGCTGCTGA
Band lengths:
194-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]