GgaEX1006066 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14920132-14921301:+
Coord C1 exon
chr14:14920132-14920233
Coord A exon
chr14:14920959-14921086
Coord C2 exon
chr14:14921202-14921301
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACAATTTAATATTTTCTAGGAT
3' ss Score
8.58
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
Seq A exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
Seq C2 exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.9=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACGGTAATATTCTGCCTCCT
R:
CTGATGGGGTCTGGACTGCT
Band lengths:
187-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]