Special

RnoEX6004611 @ rn6

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189533280-189534698:+
Coord C1 exon
chr1:189533280-189533381
Coord A exon
chr1:189534389-189534516
Coord C2 exon
chr1:189534599-189534698
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGCAGGAT
3' ss Score
12.74
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
ATTTTAGATGAAAATGGCACTATTCTTCCTCCTGGACAAGAAGGGGATATTGCTGTTCAAGTTCTTCCTGATCGACCATTTGGCCTTTTTACTCATTATGTA
Seq A exon
GATAATCCTTCGAAAACAGCTTCAACTCTACGAGGGAATTTCTACATCACTGGGGACAGAGGCTATATGGATGAGGATGGCTATTTCTGGTTTGTTGCAAGATCAGACGATGTCATATTATCCTCTGG
Seq C2 exon
TTACCGAATTGGACCATTTGAGGTAGAGAGTGCTCTCATAGAGCATCCTTCCATTGCAGAGTCAGCTGTTGTCAGCAGCCCTGACCCCATCAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246-'15-20,'15-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAATGGCACTATTCTTCCTCCT
R:
CTCTCCTCTGATGGGGTCA
Band lengths:
194-322
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]