GgaEX1006066 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15634210-15635379:+
Coord C1 exon
chr14:15634210-15634311
Coord A exon
chr14:15635037-15635164
Coord C2 exon
chr14:15635280-15635379
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACAATTTAATATTTTCTAGGAT
3' ss Score
8.58
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
Seq A exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
Seq C2 exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.9=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACGGTAATATTCTGCCTCCT
R:
CTGATGGGGTCTGGACTGCT
Band lengths:
187-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]