Special

HsaEX6042615 @ hg38

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20790587-20796489:+
Coord C1 exon
chr16:20790587-20790688
Coord A exon
chr16:20792002-20792129
Coord C2 exon
chr16:20796370-20796489
Length
128 bp
Sequences
Splice sites
3' ss Seq
AAATGCTATTTGTTTTGCAGGAT
3' ss Score
8.7
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
ATTGTAGATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGATATTGGCATTCAAGTTCTACCCAACCGACCATTTGGCCTTTTTACTCATTACGTA
Seq A exon
GATAATCCTTCAAAAACAGCTTCAACTCTACGAGGCAATTTCTATATCACTGGGGACAGAGGATATATGGATAAAGATGGGTATTTCTGGTTTGTTGCAAGAGCAGATGATGTCATATTATCCTCTGG
Seq C2 exon
GTAGTAAAGGCTTTTGTCGTTCTAAATCCTGATTACAAGTCACATGATCAAGAACAACTAATAAAGGAGATTCAGGAGCATGTTAAAAAAACTACAGCACCTTACAAATATCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187_MULTIEX2-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.019 A=0.000 C2=0.066
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(41.5=100),PF131931=AMP-binding_C=PU(12.7=22.9)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF0050123=AMP-binding=PD(1.2=2.4),PF131931=AMP-binding_C=FE(63.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAGATGTAAATGGCAATGTTCT
R:
TCTGGGATATTTGTAAGGTGCTGT
Band lengths:
218-346
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains