Special

HsaEX6042615 @ hg19

Exon Skipping

Gene
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20801909-20803657:+
Coord C1 exon
chr16:20801909-20802010
Coord A exon
chr16:20803324-20803451
Coord C2 exon
chr16:20803558-20803657
Length
128 bp
Sequences
Splice sites
3' ss Seq
AAATGCTATTTGTTTTGCAGGAT
3' ss Score
8.7
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
ATTGTAGATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGATATTGGCATTCAAGTTCTACCCAACCGACCATTTGGCCTTTTTACTCATTACGTA
Seq A exon
GATAATCCTTCAAAAACAGCTTCAACTCTACGAGGCAATTTCTATATCACTGGGGACAGAGGATATATGGATAAAGATGGGTATTTCTGGTTTGTTGCAAGAGCAGATGATGTCATATTATCCTCTGG
Seq C2 exon
CTATCGAATTGGACCATTTGAGGTAGAAAATGCCCTGAATGAACACCCTTCAGTTGCAGAGTCAGCTGTTGTCAGCAGCCCAGACCCCATCAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.029 A=0.000 C2=0.147
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(40.5=100),PF131931=AMP-binding_C=PU(11.3=20.0)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
HIGH PSI
([1])
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTAGATGTAAATGGCAATGTTCT
R:
CTCTCCTCTGATGGGGTCTGG
Band lengths:
202-330
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains