BtaEX6108948 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18227230-18231523:+
Coord C1 exon
chr25:18227230-18227331
Coord A exon
chr25:18231211-18231338
Coord C2 exon
chr25:18231424-18231523
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGACTCACTGTGTCTTTCAGGAC
3' ss Score
8.35
5' ss Seq
AAGGTCAAG
5' ss Score
1.99
Exon sequences
Seq C1 exon
GTTGTAGATGAGGAGGGCAATATCTTACCTCCTGGAGAAGAAGGGAATGTTGCCATCCGTGTCAGACCCACCAGACCCTTCTGTTTCTTCACTTGCTATTTG
Seq A exon
GACAACCCTGAGAAGACAGCAGCATCAGAACGAGGGGACTTCTACATCACAGGGGACCGAGCCCACATGGATAAGGATGGCTACTTTTGGTTCATGGGAAGAAATGATGACGTGATCAATTCCTCAAG
Seq C2 exon
CTACCGGATCGGGCCTGTTGAGGTGGAGAGTGCACTTGCTGAGCACCCAGCTGTCCTGGAGTCTGCTGTGGTCAGCAGCCCGGACCCCATTAGAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.163 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=PD(9.9=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTAGATGAGGAGGGCAAT
R:
CTCTAATGGGGTCCGGGCTG
Band lengths:
197-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]