GgaEX1004204 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P432]
Coordinates
chr23:823570-855665:+
Coord C1 exon
chr23:823570-823619
Coord A exon
chr23:837561-837655
Coord C2 exon
chr23:855601-855665
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATTTTTTTTTTCAGACC
3' ss Score
11.15
5' ss Seq
TTAGTAAGC
5' ss Score
4.41
Exon sequences
Seq C1 exon
CTGCAGAGGCAATGGCAGAGCCGCGGCTGCAGGGCGGGGGGCGAGCGCAG
Seq A exon
ACCATTTCTACTCCTTACCAAGACCATTTTGAATCCTAATCCTGGCTTCCGAAGTACTTGCAGCCCGTCCCAGCCTGGTATCAGCCGCACTTTTA
Seq C2 exon
GCTGAATTAAATCTTGGGCAAACGAGGGAGAGACACCATCAAAATTACAGGCTATCAAGTCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021812_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAATGGCAGAGC
R:
AGTGGACTTGATAGCCTGTAATT
Band lengths:
113-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]