GgaEX1004305 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79357792-79359028:+
Coord C1 exon
chr1:79357792-79357875
Coord A exon
chr1:79358289-79358465
Coord C2 exon
chr1:79358944-79359028
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGTAATCACTGTTCCTTAGGTG
3' ss Score
6.96
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GAGAGTCCGTGAAAGAGAAGTTTTCTCTGTTGCTTCCTTCAAATGTGGTACAAGACTCAGGCAGAGCATATTTCTCAGTGCTAG
Seq A exon
GTGACCTCATGGGCACTGCCATGCAGAACCTGCACCAGCTACTCCAAATGCCGTTTGGTTGTGGTGAACAGAACATGGTCCTGTTTGCACCCAACATCTATGTCCTGGACTATCTGAACAAGACAGGACAGCTGAGTGAGGAGGTCAAATCCAAGGCCATCGGATACTTAGTGAGCG
Seq C2 exon
GTTATCAGAGGCAGATGAACTACAAGCACCCAGATGGCTCTTACAGTACCTTTGGACCACGTTATCGCCAACCGGGGAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'36-40,'36-38,37-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCCGTGAAAGAGAAGT
R:
GTTCCCCGGTTGGCGATAAC
Band lengths:
164-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]