MmuEX6006752 @ mm10
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121667115-121668616:+
Coord C1 exon
chr6:121667115-121667198
Coord A exon
chr6:121668046-121668222
Coord C2 exon
chr6:121668529-121668616
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTCCCATTTTCTAGGAG
3' ss Score
10.37
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGCTGAGGTATCGGAACAGATATCTCTGAAACTGCCATCAGATGTGGTAGAGGAATCTGCCCGAGCTTCTGTCACAGTTTTGG
Seq A exon
GAGATATATTGGGTTCTGCTATGCAGAACACACAGGATCTCCTTAAGATGCCCTATGGCTGTGGAGAACAGAACATGGTTCTGTTTGCTCCTAATATCTATGTCCTGGACTATCTGAATGAAACAGAGCAGCTGACACAGGAGATCAAGACCAAGGCCATTACCTATCTCAATACGG
Seq C2 exon
GTTACCAAAGACAATTAAACTACAAGCACCGGGATGGCTCCTACAGTACTTTTGGGGATAAACCTGGTAGGAGTCATGCCAATACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'20-36,'20-30,31-36=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGAGGTATCGGAACAGA
R:
AGGTATTGGCATGACTCCTACCA
Band lengths:
171-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types