BtaEX6024104 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101330650-101331608:+
Coord C1 exon
chr5:101330650-101330733
Coord A exon
chr5:101331021-101331197
Coord C2 exon
chr5:101331521-101331608
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTCCCATTTCCTAGGAG
3' ss Score
9.08
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGCCAAGGTGTCTGAATCATTATCTCTGAAGCTGCCACCAAATGTGGTGGAAGAATCTGCCCGAGCCTCCTTCTCAGTTTTAG
Seq A exon
GAGACATATTAGGCTCTGCCATGAGAAACACCCAAAATCTCCTCCAAATGCCCTATGGTTGTGGAGAACAGAATATGGCCCGCTTTGCCCCTAACATCTATGTTCTGGATTATCTAAATGAGACACAGCAGCTGACTGCAGAGCTCAAGTCCAAGGCTATCCTCTACCTCAACACTG
Seq C2 exon
GTTACCAGAGACAGCTGCTCTACAAGCACTTCGATGGCTCTTACAGCACCTTTGGGGAGCATCGTGGCAACAGTGAGGGCAATACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'23-31,'23-29,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(11.3=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAAGGTGTCTGAATCAT
R:
AGTATTGCCCTCACTGTTGCC
Band lengths:
170-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]