GgaEX6003300 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79427527-79429006:-
Coord C1 exon
chr1:79428923-79429006
Coord A exon
chr1:79428113-79428289
Coord C2 exon
chr1:79427527-79427608
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGGCATCTTTTCTTCACCAGGTG
3' ss Score
10.26
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGATGTCATTTCTCAGGATGTTGCTATAGATCTACCTACAAATGTGGTAGAAGGATCACCCAGACCTTCCTTTTCTGTTGTTG
Seq A exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATATGAAGTCCAAGACCATTGGATACTTAGTGAGCG
Seq C2 exon
GCTACCAGAAGCAGCTATCATACAAACATCCTGATGGATCCTACAGCACATTTGGCATTAGAGATAAAGAAGGGAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(21.7=100)
A:
PF0020717=A2M=PD(34.9=48.3),PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(6.2=1.7)
C2:
PF076789=A2M_comp=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATTTCTCAGGATGTTGCT
R:
CAGGTGTTCCCTTCTTTATCTCT
Band lengths:
162-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]