DreEX0000032 @ danRer10
Exon Skipping
Gene
ENSDARG00000076771 | A2ML1 (8 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3636181-3637157:-
Coord C1 exon
chr3:3637074-3637157
Coord A exon
chr3:3636558-3636734
Coord C2 exon
chr3:3636181-3636256
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTCCATCTTCCCCTCATAGGGG
3' ss Score
10.88
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAAGCGTGCTTTCAGAGAGCGTGAAGATCACACTTCCTACAAATGTCATCCAGGGATCAGCCAGCTGCTCTGTATCAGTCATTG
Seq A exon
GGGACATCATGGGTCGTGCACTGAACAACCTGGCCAATTTGCTACAGATGCCTTCTGGCTGTGGAGAACAGAACATGATCATTCTCGCTCCCAATGTTTACATCCTACGATATCTGACAGTAACTGCACAGCTCACTCCAGCCGTCCAAGACACTGCCACGAGTTATCTTCTGACTG
Seq C2 exon
GATATCAAGGAGAGCTGAACTACAGGCACAGTGATGGTTCATTCAGCACTTTTGGTTATGATGCATCCAATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076771_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGTGCTTTCAGAGAGCG
R:
TTGGATGCATCATAACCAAAAGTGC
Band lengths:
154-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]